Papers & Projects

Projects

Users of our services are encouraged to cite Tapis, Abaco and Chameleon in publications that result from using TACC Cloud resources. Please use the following reference(s):

Tapis

Reference Paper
1) Tapis: An API Platform for Reproducible, Distributed Computational Research.
Advances in Intelligent Systems and Computing. 2021.
Book chapter; DOI: 10.1007/978-3-030-73100-7_61
Part of ISSN: 2194-5357
Part of ISSN: 2194-5365
Additional Papers
2) Tapis v3 Streams API: Time‐series and data‐driven event support in science gateway infrastructure.
Concurrency and Computation: Practice and Experience. 2021-10-10.
Journal article; DOI: 10.1002/cpe.6103
Part of ISSN: 1532-0626
Part of ISSN: 1532-0634
3) Prediction of whole-cell transcriptional response with machine learning.
Bioinformatics. 2021-09-27
Journal article; DOI: 10.1093/bioinformatics/btab676
Part of ISSN: 1367-4803
Part of ISSN: 1460-2059
4) Building Tapis v3 Streams API Support for Real-Time Streaming Data Event-Driven Workflows.
Practice and Experience in Advanced Research Computing. 2021-07-17.
Conference paper; DOI: 10.1145/3437359.3465567
5) Real-World, Self-Hosted Kubernetes Experience
Practice and Experience in Advanced Research Computing. 2021-07-17
Conference paper; DOI: 10.1145/3437359.3465603
6) Sustainability in the Tapis Framework.
Proceedings of the 54th Hawaii International Conference on System Sciences. 2021
Conference Paper; DOI: 10.24251/hicss.2021.874
7) Tapis API Development with Python: Best Practices In Scientific REST API Implementation.
Practice and Experience in Advanced Research Computing. 2020-07-26
Conference paper; DOI: 10.1145/3311790.3396647
8) SSH-Backed API Performance Case Study.
Benchmarking, Measuring, and Optimizing. 2020.
Book chapter; DOI: 10.1007/978-3-030-49556-5_27
Part of ISSN: 0302-9743
Part of ISSN: 1611-3349
9) Building Science Gateway Infrastructure in the Middle of the Pacific and Beyond.
Proceedings of the Practice and Experience on Advanced Research Computing. 2018-07-22
Conference paper; DOI: 10.1145/3219104.3219151
10) Virtualizing the Stampede2 Supercomputer with Applications to HPC in the Cloud.
Proceedings of the Practice and Experience on Advanced Research Computing. 2018-07-22
Conference paper; DOI: 10.1145/3219104.3219131
11) Distributed Systems of Microservices Using Docker and Serfnode.
7th International Workshop on Science Gateways (IWSG). 2015-06.
Conference paper; DOI: 10.1109/iwsg.2015.16

Abaco

Reference Paper
1) Rapid development of scalable, distributed computation with Abaco.
Proceedings of the 10th International Workshop on Science Gateways (2018).
Additional Papers
2) Tapis v3 Streams API: Time‐series and data‐driven event support in science gateway infrastructure.
Concurrency and Computation: Practice and Experience. 2021-10-10.
Journal-article; DOI: 10.1002/cpe.6103
Part of ISSN: 1532-0626
Part of ISSN: 1532-0634
3) Prediction of whole-cell transcriptional response with machine learning.
Bioinformatics. 2021-09-27
Journal article; DOI: 10.1093/bioinformatics/btab676
Part of ISSN: 1367-4803
Part of ISSN: 1460-2059
4) The Abaco Platform: A Performance and Scalability Study on the Jetstream Cloud.
Advances in Parallel & Distributed Processing, and Applications. 2021
Conference paper; DOI: 10.1007/978-3-030-69984-0_77
Part of ISBN: 978-3-030-69984-0
5) GenApp, containers and Abaco.
Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning). 2019-07-28.
Conference paper; DOI: 10.1145/3332186.3332191

Chameleon

Keahey, K., Riteau, P., Stanzione, D., Cockerill, T., Mambretti, J., Rad, P., Ruth, P. Chameleon: a Scalable Production Testbed for Computer Science Research, book chapter in “Contemporary High Performance Computing: From Petascale toward Exascale, Volume 3”, Jeffrey Vetter ed., 2018

JetStream

Stewart, C.A., Cockerill, T.M., Foster, I., Hancock, D., Merchant, N., Skidmore, E., Stanzione, D., Taylor, J., Tuecke, S., Turner, G., Vaughn, M., and Gaffney, N.I., Jetstream: a self-provisioned, scalable science and engineering cloud environment. 2015, In Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure. St. Louis, Missouri. ACM: 2792774. p. 1-8. http://dx.doi.org/10.1145/2792745.2792774

If you have any questions about citing us, please email CICsupport@tacc.utexas.edu